09.30-11.00
ROOM C |
WORKSHOP 1
SECOND INTERNATIONAL WORKSHOP ON PARALLELISM IN BIOINFORMATICS (PBIO 2014)
- Predicting Protein-Protein Interactions based on Rotation of Proteins in 3D-Space
Samaneh Aghajanbaglo, Sobhan Moosavi, Maseud Rahgozar and Amir Rahimi.
- A Hybrid OpenMP and OpenMPI Approach to Geometrical Motif Search in Proteins
Marco Ferretti, Mirto Musci and Luigi Santangelo.
- Applying OpenMP-based Parallel Implementations of NSGA-II and SPEA2 to Study Phylogenetic Relationships
Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez.
- Feature Selection in High-Dimensional EEG Data by Parallel Multi-objective Optimization
Dragi Kimovski, Julio Ortega, Andrés Ortiz and Raúl Baños.
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09.30-11.00
ROOM D
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WORKSHOP 2
MONITORING AND ANALYSIS FOR HIGH PERFORMANCE COMPUTING SYSTEMS PLUS APPLICATIONS (HPCMASPA)
- Experiences with NVIDIA FERMI and Kepler GPGPU's.
MP. Romero and N. DeBardeleben
- Power Monitoring with PAPI for Extreme Scale Architectures and Dataflow-based Programming Models
H. McCraw, J. Ralph, A. Danalis, and J. Dongarra
- Monitoring Application Resource Utilization on the Intel PHI Coprocessor
J. Brandt and A. Gentile
- Memory Reliability and Performance Degradation: Hunting Rabbits with an Elephant Gun?
B. Allan
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09.30-11.00
POSTER AREA
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CONFERENCE POSTERS + STUDENT POSTERS |
11.00-11.30 |
COFFEE BREAK |
11.30-13.00
ROOM C
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WORKSHOP 1
SECOND INTERNATIONAL WORKSHOP ON PARALLELISM IN BIOINFORMATICS (PBIO 2014)
- Smith-Waterman Algorithm on Heterogeneous System: A Case Study
Enzo Rucci, A. de Giusti, M. Naiouf, G. Botella, C. García and M. Prieto-Matias.
- High-Performance X-Ray Tomography Reconstruction Algorithm based on Heterogeneous Accelerated Computing Systems
Estefania Serrano, Guzman Bermejo, Javier Garcia Blas and Jesus Carretero.
- Anisotropic Nonlinear Diffusion for Filtering 3D Images in Structural Biology on
GPUs Siham Tabik and L. Felipe Romero.
- Multi-GPU Acceleration of DARTEL (Early Detection of Alzheimer)
Pedro Valero-Lara, Alfredo Pinelli, Julien Favier and M. Prieto-Matias.
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11.30-13.00
ROOM D |
WORKSHOP 2
MONITORING AND ANALYSIS FOR HIGH PERFORMANCE COMPUTING SYSTEMS PLUS APPLICATIONS (HPCMASPA)
- It Takes a Village: Monitoring the Blue Waters Supercomputer
B. D. Semeraro, R. Sisneros, J. Fullop and G. H. Bauer
- ProMon: Production-Time Application Monitoring
H. Sharifi and J. Cook
- Realtime Monitoring Using Riemann, Syslog-ng and Collectd
F. Wernli
- Towards a Better Mousetrap, Well In this Case a Better HPC System Testing Framework
C. Idler
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11.30-13.00 POSTER AREA
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CONFERENCE POSTERS + STUDENT POSTERS |
13.00-14.30 ARTIGAS ROOM |
STUDENT PROGRAM 2 HOT TOPIC COURSES |
13.00-14.30 |
LUNCH |
14.30-16.00
ROOM C |
WORKSHOP 1
SECOND INTERNATIONAL WORKSHOP ON PARALLELISM IN BIOINFORMATICS (PBIO 2014)
- Job Scheduling in Hadoop with Shared Input Policy and RAMDISK
Aprigio Bezerra, Porfídio Hernández, Antonio Espinosa and Juan Carlos Moure.
- Support for Bioinformatics Applications through Volunteer and Scalable Computing Frameworks
Felipe Gutierrez, Danilo Azevedo, Marcos Barreto and Rodrigo Zucoloto
- Evaluating Grasp-based Cloud Dimensioning for Comparative Genomics: a Practical Approach
Rafaelli Coutinho, Lúcia Drummond, Yuri Frota, Daniel de Oliveira and Kary Ocaña.
- A Scalable Framework for Large-Scale Analysis of Gene-Gene Interactions
Moez Ben Haj Hmida and Yahya Slimani.
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14.30-16.00
ROOM D |
WORKSHOP 2
MONITORING AND ANALYSIS FOR HIGH PERFORMANCE COMPUTING SYSTEMS PLUS APPLICATIONS (HPCMASPA)
- Methodology and Application of Machine Learning Algorithms To Classify the Performance of High Performance Cluster Components
C. Idler and P. Romero
- Demonstrating Improved Application Performance Using Dynamic Monitoring and Task Mapping
J. Brandt, K. Devine, A. Gentile, and K. Pedretti
- Multiobjective Optimization Technique Based on Monitoring Information to Increase the Performance of Thread Migration on Multicores
O. Lorenzo, T. Pena, J. Cabaleiro, J. Pichel and F. Rivera
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14.30-16.00 POSTER AREA
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CONFERENCE POSTERS + STUDENT POSTERS |
16.00-16.30 |
COFFEE BREAK |
16.30-18.00
ROOM D
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WORKSHOP 2
ROOM D MONITORING AND ANALYSIS FOR HIGH PERFORMANCE COMPUTING SYSTEMS PLUS APPLICATIONS (HPCMASPA)
Panel Discussion and Question and Answer
Panel Members TBD
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16.30-18.00 POSTER AREA
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CONFERENCE POSTERS + STUDENT POSTERS |